omero-integration

SKILL.md

OMERO Integration

Overview

OMERO is an open-source platform for managing, visualizing, and analyzing microscopy images and metadata. Access images via Python API, retrieve datasets, analyze pixels, manage ROIs and annotations, for high-content screening and microscopy workflows.

When to Use This Skill

This skill should be used when:

Working with OMERO Python API (omero-py) to access microscopy data

Retrieving images, datasets, projects, or screening data programmatically

Analyzing pixel data and creating derived images

Creating or managing ROIs (regions of interest) on microscopy images

Adding annotations, tags, or metadata to OMERO objects

Storing measurement results in OMERO tables

Creating server-side scripts for batch processing

Performing high-content screening analysis

Core Capabilities