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Biological data toolkit. Sequence analysis, alignments, phylogenetic trees, diversity metrics (alpha/beta, UniFrac), ordination (PCoA), PERMANOVA, FASTA/Newick…
scikit-bio Overview scikit-bio is a comprehensive Python library for working with biological data. Apply this skill for bioinformatics analyses spanning sequence manipulation, alignment, phylogenetics, microbial ecology, and multivariate statistics. When to Use This Skill This skill should be used when the user: Works with biological sequences (DNA, RNA, protein) Needs to read/write biological file formats (FASTA, FASTQ, GenBank, Newick, BIOM, etc.) Performs sequence alignments or searches for motifs Constructs or analyzes phylogenetic trees Calculates diversity metrics (alpha/beta diversity, UniFrac distances) Performs ordination analysis (PCoA, CCA, RDA) Runs statistical tests on biological/ecological data (PERMANOVA, ANOSIM, Mantel) Analyzes microbiome or community ecology data Works with protein embeddings from language models Needs to manipulate biological data tables
don't have the plugin yet? install it then click "run inline in claude" again.