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Query the Precision Medicine Knowledge Graph (PrimeKG) for multiscale biological data including genes, drugs, diseases, phenotypes, and more.
PrimeKG Knowledge Graph Skill Overview PrimeKG is a precision medicine knowledge graph that integrates over 20 primary databases and high-quality scientific literature into a single resource. It contains over 100,000 nodes and 4 million edges across 29 relationship types, including drug-target, disease-gene, and phenotype-disease associations. Key capabilities: Search for nodes (genes, proteins, drugs, diseases, phenotypes) Retrieve direct neighbors (associated entities and clinical evidence) Analyze local disease context (related genes, drugs, phenotypes) Identify drug-disease paths (potential repurposing opportunities) Data access: Programmatic access via query_primekg.py. Data is stored at C:\Users\eamon\Documents\Data\PrimeKG\kg.csv. When to Use This Skill This skill should be used when:
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